NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,409.2 |
| Mean read quality |
11.6 |
| Median read length |
4,366.0 |
| Median read quality |
12.6 |
| Number of reads |
7,891.0 |
| Read length N50 |
4,658.0 |
| STDEV read length |
1,166.0 |
| Total bases |
34,793,284.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
7891 (100.0%) 34.8Mb |
| >Q7 |
7891 (100.0%) 34.8Mb |
| >Q10 |
7237 (91.7%) 32.0Mb |
| >Q12 |
5247 (66.5%) 23.4Mb |
| >Q15 |
148 (1.9%) 0.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.4 (3458) |
| 2 |
17.4 (3877) |
| 3 |
17.0 (4697) |
| 4 |
16.9 (4519) |
| 5 |
16.8 (3805) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
14300 (12.3) |
| 2 |
10458 (12.8) |
| 3 |
10381 (15.0) |
| 4 |
10357 (11.8) |
| 5 |
10218 (8.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot