NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,466.6 |
| Mean read quality |
11.1 |
| Median read length |
3,417.5 |
| Median read quality |
12.0 |
| Number of reads |
348.0 |
| Read length N50 |
3,783.0 |
| STDEV read length |
1,124.1 |
| Total bases |
1,206,367.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
348 (100.0%) 1.2Mb |
| >Q7 |
348 (100.0%) 1.2Mb |
| >Q10 |
314 (90.2%) 1.1Mb |
| >Q12 |
173 (49.7%) 0.6Mb |
| >Q15 |
4 (1.1%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.5 (3595) |
| 2 |
16.1 (5098) |
| 3 |
15.3 (2952) |
| 4 |
15.2 (4473) |
| 5 |
14.8 (3448) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7078 (14.0) |
| 2 |
7010 (12.0) |
| 3 |
6666 (12.9) |
| 4 |
6522 (12.7) |
| 5 |
6398 (11.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot