NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
6,855.0 |
| Mean read quality |
11.9 |
| Median read length |
6,724.0 |
| Median read quality |
13.0 |
| Number of reads |
3,904.0 |
| Read length N50 |
7,260.0 |
| STDEV read length |
1,900.1 |
| Total bases |
26,761,833.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3904 (100.0%) 26.8Mb |
| >Q7 |
3904 (100.0%) 26.8Mb |
| >Q10 |
3674 (94.1%) 25.3Mb |
| >Q12 |
2861 (73.3%) 19.7Mb |
| >Q15 |
123 (3.2%) 0.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.4 (5834) |
| 2 |
17.4 (5985) |
| 3 |
17.1 (4627) |
| 4 |
16.6 (6420) |
| 5 |
16.6 (8602) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
19661 (13.9) |
| 2 |
17234 (13.1) |
| 3 |
16406 (13.6) |
| 4 |
15742 (14.1) |
| 5 |
15372 (12.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot