NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,033.4 |
| Mean read quality |
11.5 |
| Median read length |
4,912.0 |
| Median read quality |
12.5 |
| Number of reads |
18,568.0 |
| Read length N50 |
5,236.0 |
| STDEV read length |
1,313.4 |
| Total bases |
93,460,548.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
18568 (100.0%) 93.5Mb |
| >Q7 |
18568 (100.0%) 93.5Mb |
| >Q10 |
16961 (91.3%) 85.5Mb |
| >Q12 |
11446 (61.6%) 57.6Mb |
| >Q15 |
234 (1.3%) 1.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.5 (3455) |
| 2 |
17.2 (5239) |
| 3 |
17.0 (3955) |
| 4 |
16.8 (5095) |
| 5 |
16.8 (3993) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
14085 (13.4) |
| 2 |
13523 (10.9) |
| 3 |
13056 (12.2) |
| 4 |
12985 (13.1) |
| 5 |
12897 (12.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot