NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,124.0 |
| Mean read quality |
11.0 |
| Median read length |
4,036.0 |
| Median read quality |
12.0 |
| Number of reads |
24,381.0 |
| Read length N50 |
4,307.0 |
| STDEV read length |
1,103.2 |
| Total bases |
100,547,400.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
24381 (100.0%) 100.5Mb |
| >Q7 |
24381 (100.0%) 100.5Mb |
| >Q10 |
21353 (87.6%) 88.7Mb |
| >Q12 |
12359 (50.7%) 51.9Mb |
| >Q15 |
47 (0.2%) 0.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.4 (3634) |
| 2 |
16.4 (2378) |
| 3 |
16.1 (4881) |
| 4 |
16.1 (2876) |
| 5 |
15.9 (5302) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
13914 (9.8) |
| 2 |
13078 (8.9) |
| 3 |
11208 (11.2) |
| 4 |
11184 (12.5) |
| 5 |
11052 (9.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot