NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,268.1 |
| Mean read quality |
10.4 |
| Median read length |
4,141.0 |
| Median read quality |
11.2 |
| Number of reads |
4,393.0 |
| Read length N50 |
4,394.0 |
| STDEV read length |
1,193.5 |
| Total bases |
18,749,721.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
4393 (100.0%) 18.7Mb |
| >Q7 |
4393 (100.0%) 18.7Mb |
| >Q10 |
3595 (81.8%) 15.4Mb |
| >Q12 |
954 (21.7%) 4.2Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.8 (4347) |
| 2 |
14.6 (8368) |
| 3 |
14.4 (6088) |
| 4 |
14.3 (4750) |
| 5 |
14.2 (3853) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11614 (10.6) |
| 2 |
11397 (11.3) |
| 3 |
11093 (8.9) |
| 4 |
9963 (11.5) |
| 5 |
9005 (10.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot