NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,667.4 |
| Mean read quality |
12.0 |
| Median read length |
5,491.0 |
| Median read quality |
12.9 |
| Number of reads |
8,655.0 |
| Read length N50 |
5,854.0 |
| STDEV read length |
1,444.5 |
| Total bases |
49,051,586.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
8655 (100.0%) 49.1Mb |
| >Q7 |
8655 (100.0%) 49.1Mb |
| >Q10 |
8366 (96.7%) 47.5Mb |
| >Q12 |
6455 (74.6%) 37.0Mb |
| >Q15 |
138 (1.6%) 0.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.3 (5124) |
| 2 |
16.2 (7069) |
| 3 |
16.1 (6890) |
| 4 |
16.1 (5877) |
| 5 |
16.0 (4753) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
16487 (13.7) |
| 2 |
14703 (12.7) |
| 3 |
13963 (13.2) |
| 4 |
13770 (11.5) |
| 5 |
13766 (10.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot