NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,244.9 |
| Mean read quality |
11.8 |
| Median read length |
4,148.0 |
| Median read quality |
12.8 |
| Number of reads |
5,339.0 |
| Read length N50 |
4,399.0 |
| STDEV read length |
1,021.3 |
| Total bases |
22,663,423.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
5339 (100.0%) 22.7Mb |
| >Q7 |
5339 (100.0%) 22.7Mb |
| >Q10 |
5025 (94.1%) 21.4Mb |
| >Q12 |
3755 (70.3%) 16.1Mb |
| >Q15 |
115 (2.2%) 0.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.6 (4236) |
| 2 |
16.7 (5516) |
| 3 |
16.6 (2475) |
| 4 |
16.5 (5866) |
| 5 |
16.5 (4566) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10141 (12.9) |
| 2 |
9430 (11.0) |
| 3 |
9168 (12.3) |
| 4 |
9065 (13.1) |
| 5 |
8903 (14.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot