NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,245.7 |
| Mean read quality |
12.1 |
| Median read length |
4,154.0 |
| Median read quality |
13.0 |
| Number of reads |
969.0 |
| Read length N50 |
4,475.0 |
| STDEV read length |
1,251.3 |
| Total bases |
4,114,057.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
969 (100.0%) 4.1Mb |
| >Q7 |
969 (100.0%) 4.1Mb |
| >Q10 |
933 (96.3%) 4.0Mb |
| >Q12 |
737 (76.1%) 3.1Mb |
| >Q15 |
97 (10.0%) 0.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.6 (2876) |
| 2 |
17.3 (4119) |
| 3 |
17.2 (4867) |
| 4 |
17.0 (6909) |
| 5 |
17.0 (3182) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10837 (14.3) |
| 2 |
8903 (12.2) |
| 3 |
8880 (12.4) |
| 4 |
8436 (14.3) |
| 5 |
8410 (13.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot