NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,307.1 |
| Mean read quality |
11.6 |
| Median read length |
3,184.0 |
| Median read quality |
12.5 |
| Number of reads |
24,132.0 |
| Read length N50 |
3,455.0 |
| STDEV read length |
1,037.2 |
| Total bases |
79,806,899.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
24132 (100.0%) 79.8Mb |
| >Q7 |
24132 (100.0%) 79.8Mb |
| >Q10 |
22386 (92.8%) 74.2Mb |
| >Q12 |
15918 (66.0%) 53.2Mb |
| >Q15 |
386 (1.6%) 1.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.1 (3443) |
| 2 |
17.0 (3039) |
| 3 |
17.0 (2672) |
| 4 |
16.9 (3787) |
| 5 |
16.8 (3836) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
12815 (13.0) |
| 2 |
12753 (14.6) |
| 3 |
12332 (14.8) |
| 4 |
10665 (10.9) |
| 5 |
10189 (13.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot