NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,807.6 |
| Mean read quality |
11.8 |
| Median read length |
4,709.0 |
| Median read quality |
12.8 |
| Number of reads |
21,758.0 |
| Read length N50 |
5,046.0 |
| STDEV read length |
1,297.5 |
| Total bases |
104,603,961.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
21758 (100.0%) 104.6Mb |
| >Q7 |
21758 (100.0%) 104.6Mb |
| >Q10 |
20492 (94.2%) 98.8Mb |
| >Q12 |
15588 (71.6%) 75.4Mb |
| >Q15 |
486 (2.2%) 2.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.2 (3330) |
| 2 |
17.0 (6678) |
| 3 |
16.9 (5146) |
| 4 |
16.8 (4687) |
| 5 |
16.7 (3488) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
15674 (13.1) |
| 2 |
14916 (12.4) |
| 3 |
14660 (13.7) |
| 4 |
13346 (14.4) |
| 5 |
12834 (13.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot