NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,580.3 |
| Mean read quality |
10.2 |
| Median read length |
4,440.0 |
| Median read quality |
11.0 |
| Number of reads |
19,242.0 |
| Read length N50 |
4,733.0 |
| STDEV read length |
1,170.3 |
| Total bases |
88,134,704.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
19242 (100.0%) 88.1Mb |
| >Q7 |
19242 (100.0%) 88.1Mb |
| >Q10 |
15441 (80.2%) 71.0Mb |
| >Q12 |
2722 (14.1%) 12.5Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.7 (6092) |
| 2 |
14.3 (5691) |
| 3 |
14.2 (4590) |
| 4 |
14.1 (4989) |
| 5 |
14.1 (7400) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
15076 (9.4) |
| 2 |
13754 (10.9) |
| 3 |
11454 (10.6) |
| 4 |
11381 (11.5) |
| 5 |
11361 (11.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot