NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,280.8 |
| Mean read quality |
10.2 |
| Median read length |
4,178.0 |
| Median read quality |
10.9 |
| Number of reads |
2,482.0 |
| Read length N50 |
4,456.0 |
| STDEV read length |
1,244.6 |
| Total bases |
10,624,925.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
2482 (100.0%) 10.6Mb |
| >Q7 |
2482 (100.0%) 10.6Mb |
| >Q10 |
2080 (83.8%) 9.0Mb |
| >Q12 |
217 (8.7%) 1.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.6 (4331) |
| 2 |
13.3 (4805) |
| 3 |
13.2 (4118) |
| 4 |
13.2 (3172) |
| 5 |
13.1 (5094) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9602 (11.3) |
| 2 |
9248 (11.0) |
| 3 |
9238 (12.2) |
| 4 |
9220 (10.0) |
| 5 |
9217 (10.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot