NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,306.1 |
| Mean read quality |
12.6 |
| Median read length |
4,191.0 |
| Median read quality |
13.5 |
| Number of reads |
25,038.0 |
| Read length N50 |
4,473.0 |
| STDEV read length |
1,126.6 |
| Total bases |
107,814,970.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
25038 (100.0%) 107.8Mb |
| >Q7 |
25038 (100.0%) 107.8Mb |
| >Q10 |
24450 (97.7%) 105.4Mb |
| >Q12 |
21167 (84.5%) 91.5Mb |
| >Q15 |
2193 (8.8%) 9.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.3 (2601) |
| 2 |
18.1 (2608) |
| 3 |
17.8 (3544) |
| 4 |
17.8 (5395) |
| 5 |
17.5 (4419) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
12253 (13.3) |
| 2 |
12082 (10.8) |
| 3 |
11866 (12.2) |
| 4 |
11146 (9.3) |
| 5 |
11126 (13.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot