NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,972.8 |
| Mean read quality |
11.0 |
| Median read length |
3,805.5 |
| Median read quality |
11.9 |
| Number of reads |
3,788.0 |
| Read length N50 |
4,024.0 |
| STDEV read length |
1,029.3 |
| Total bases |
15,049,111.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3788 (100.0%) 15.0Mb |
| >Q7 |
3788 (100.0%) 15.0Mb |
| >Q10 |
3412 (90.1%) 13.6Mb |
| >Q12 |
1747 (46.1%) 7.0Mb |
| >Q15 |
4 (0.1%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.8 (3507) |
| 2 |
15.2 (4691) |
| 3 |
15.1 (3258) |
| 4 |
15.0 (3288) |
| 5 |
15.0 (2704) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9585 (11.0) |
| 2 |
8393 (12.6) |
| 3 |
8383 (12.7) |
| 4 |
8362 (12.4) |
| 5 |
8297 (11.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot