NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,395.3 |
| Mean read quality |
12.6 |
| Median read length |
3,285.0 |
| Median read quality |
13.7 |
| Number of reads |
539.0 |
| Read length N50 |
3,696.0 |
| STDEV read length |
1,124.5 |
| Total bases |
1,830,073.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
539 (100.0%) 1.8Mb |
| >Q7 |
539 (100.0%) 1.8Mb |
| >Q10 |
507 (94.1%) 1.7Mb |
| >Q12 |
438 (81.3%) 1.5Mb |
| >Q15 |
109 (20.2%) 0.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.5 (3309) |
| 2 |
17.5 (1352) |
| 3 |
17.3 (2054) |
| 4 |
17.1 (4074) |
| 5 |
17.1 (4713) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9289 (9.6) |
| 2 |
7203 (12.4) |
| 3 |
6674 (15.7) |
| 4 |
6648 (13.9) |
| 5 |
6624 (12.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot