NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,424.7 |
| Mean read quality |
10.5 |
| Median read length |
2,717.0 |
| Median read quality |
11.5 |
| Number of reads |
25.0 |
| Read length N50 |
3,999.0 |
| STDEV read length |
1,669.2 |
| Total bases |
60,618.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
25 (100.0%) 0.1Mb |
| >Q7 |
25 (100.0%) 0.1Mb |
| >Q10 |
18 (72.0%) 0.0Mb |
| >Q12 |
10 (40.0%) 0.0Mb |
| >Q15 |
1 (4.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.9 (1828) |
| 2 |
14.4 (2802) |
| 3 |
14.4 (4240) |
| 4 |
13.1 (2094) |
| 5 |
13.0 (5047) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
5489 (10.9) |
| 2 |
5047 (13.0) |
| 3 |
4872 (9.9) |
| 4 |
4240 (14.4) |
| 5 |
4226 (12.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot