NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,025.9 |
| Mean read quality |
11.7 |
| Median read length |
2,923.0 |
| Median read quality |
12.4 |
| Number of reads |
207.0 |
| Read length N50 |
3,195.0 |
| STDEV read length |
866.8 |
| Total bases |
626,361.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
207 (100.0%) 0.6Mb |
| >Q7 |
207 (100.0%) 0.6Mb |
| >Q10 |
196 (94.7%) 0.6Mb |
| >Q12 |
134 (64.7%) 0.4Mb |
| >Q15 |
5 (2.4%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.7 (3357) |
| 2 |
15.6 (2358) |
| 3 |
15.4 (2156) |
| 4 |
15.1 (2861) |
| 5 |
15.1 (3887) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7455 (13.1) |
| 2 |
5312 (11.1) |
| 3 |
5100 (12.5) |
| 4 |
4978 (10.5) |
| 5 |
4746 (13.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot