NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
830.7 |
| Mean read quality |
10.0 |
| Median read length |
403.5 |
| Median read quality |
10.6 |
| Number of reads |
1,176.0 |
| Read length N50 |
2,036.0 |
| STDEV read length |
1,082.0 |
| Total bases |
976,869.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1176 (100.0%) 1.0Mb |
| >Q7 |
1176 (100.0%) 1.0Mb |
| >Q10 |
793 (67.4%) 0.8Mb |
| >Q12 |
231 (19.6%) 0.5Mb |
| >Q15 |
10 (0.9%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.1 (2784) |
| 2 |
16.1 (2115) |
| 3 |
15.9 (2839) |
| 4 |
15.7 (3397) |
| 5 |
15.6 (3721) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11937 (11.9) |
| 2 |
9271 (13.0) |
| 3 |
7144 (13.9) |
| 4 |
7079 (12.8) |
| 5 |
7057 (14.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot