NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,970.7 |
| Mean read quality |
13.3 |
| Median read length |
3,845.0 |
| Median read quality |
14.4 |
| Number of reads |
834.0 |
| Read length N50 |
4,144.0 |
| STDEV read length |
1,161.4 |
| Total bases |
3,311,544.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
834 (100.0%) 3.3Mb |
| >Q7 |
834 (100.0%) 3.3Mb |
| >Q10 |
812 (97.4%) 3.2Mb |
| >Q12 |
740 (88.7%) 3.0Mb |
| >Q15 |
282 (33.8%) 1.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.3 (3039) |
| 2 |
17.6 (2441) |
| 3 |
17.6 (5609) |
| 4 |
17.6 (4327) |
| 5 |
17.4 (3739) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11143 (14.4) |
| 2 |
9773 (15.4) |
| 3 |
9599 (11.9) |
| 4 |
8898 (14.1) |
| 5 |
8606 (8.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot