NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,678.5 |
| Mean read quality |
11.8 |
| Median read length |
2,624.5 |
| Median read quality |
12.8 |
| Number of reads |
972.0 |
| Read length N50 |
2,802.0 |
| STDEV read length |
789.5 |
| Total bases |
2,603,512.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
972 (100.0%) 2.6Mb |
| >Q7 |
972 (100.0%) 2.6Mb |
| >Q10 |
897 (92.3%) 2.4Mb |
| >Q12 |
688 (70.8%) 1.8Mb |
| >Q15 |
34 (3.5%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.5 (3074) |
| 2 |
16.0 (2678) |
| 3 |
15.9 (3729) |
| 4 |
15.7 (1985) |
| 5 |
15.7 (3374) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9224 (10.3) |
| 2 |
6074 (13.1) |
| 3 |
5790 (15.3) |
| 4 |
5592 (15.0) |
| 5 |
5533 (14.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot