NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,387.1 |
| Mean read quality |
12.2 |
| Median read length |
3,291.0 |
| Median read quality |
13.1 |
| Number of reads |
7,580.0 |
| Read length N50 |
3,513.0 |
| STDEV read length |
913.2 |
| Total bases |
25,674,202.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
7580 (100.0%) 25.7Mb |
| >Q7 |
7580 (100.0%) 25.7Mb |
| >Q10 |
7314 (96.5%) 24.8Mb |
| >Q12 |
5996 (79.1%) 20.5Mb |
| >Q15 |
314 (4.1%) 1.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.4 (4131) |
| 2 |
18.2 (5085) |
| 3 |
17.8 (3505) |
| 4 |
17.5 (3149) |
| 5 |
17.3 (4125) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9306 (13.5) |
| 2 |
8519 (14.1) |
| 3 |
8322 (11.8) |
| 4 |
8299 (12.9) |
| 5 |
8134 (13.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot