NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,667.5 |
| Mean read quality |
12.7 |
| Median read length |
3,420.0 |
| Median read quality |
13.3 |
| Number of reads |
43.0 |
| Read length N50 |
4,020.0 |
| STDEV read length |
1,001.0 |
| Total bases |
157,702.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
43 (100.0%) 0.2Mb |
| >Q7 |
43 (100.0%) 0.2Mb |
| >Q10 |
43 (100.0%) 0.2Mb |
| >Q12 |
39 (90.7%) 0.1Mb |
| >Q15 |
4 (9.3%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.9 (2856) |
| 2 |
15.9 (2699) |
| 3 |
15.2 (3374) |
| 4 |
15.0 (3013) |
| 5 |
14.9 (3052) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6043 (12.8) |
| 2 |
5620 (14.7) |
| 3 |
5322 (11.9) |
| 4 |
5195 (14.7) |
| 5 |
4845 (10.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot