NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,406.5 |
| Mean read quality |
12.4 |
| Median read length |
3,274.0 |
| Median read quality |
13.5 |
| Number of reads |
25,083.0 |
| Read length N50 |
3,608.0 |
| STDEV read length |
1,146.0 |
| Total bases |
85,446,026.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
25083 (100.0%) 85.4Mb |
| >Q7 |
25083 (100.0%) 85.4Mb |
| >Q10 |
23663 (94.3%) 80.8Mb |
| >Q12 |
20074 (80.0%) 68.8Mb |
| >Q15 |
3147 (12.5%) 11.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.6 (3369) |
| 2 |
18.4 (4211) |
| 3 |
18.3 (3723) |
| 4 |
18.2 (3621) |
| 5 |
18.0 (5263) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
15863 (8.9) |
| 2 |
13832 (9.7) |
| 3 |
12718 (12.6) |
| 4 |
12292 (10.8) |
| 5 |
11788 (10.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot