NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,916.7 |
| Mean read quality |
11.8 |
| Median read length |
3,831.0 |
| Median read quality |
12.9 |
| Number of reads |
9,503.0 |
| Read length N50 |
4,098.0 |
| STDEV read length |
1,049.2 |
| Total bases |
37,220,511.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
9503 (100.0%) 37.2Mb |
| >Q7 |
9503 (100.0%) 37.2Mb |
| >Q10 |
8862 (93.3%) 34.8Mb |
| >Q12 |
6855 (72.1%) 27.1Mb |
| >Q15 |
232 (2.4%) 0.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.9 (3780) |
| 2 |
16.7 (2856) |
| 3 |
16.6 (2467) |
| 4 |
16.6 (4100) |
| 5 |
16.4 (5020) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10116 (11.9) |
| 2 |
9708 (9.9) |
| 3 |
9695 (13.2) |
| 4 |
9424 (12.7) |
| 5 |
9054 (13.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot