NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
747.5 |
| Mean read quality |
9.8 |
| Median read length |
383.0 |
| Median read quality |
10.9 |
| Number of reads |
11.0 |
| Read length N50 |
1,706.0 |
| STDEV read length |
803.5 |
| Total bases |
8,222.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
11 (100.0%) 0.0Mb |
| >Q7 |
11 (100.0%) 0.0Mb |
| >Q10 |
6 (54.5%) 0.0Mb |
| >Q12 |
2 (18.2%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.3 (2959) |
| 2 |
13.3 (1706) |
| 3 |
11.8 (383) |
| 4 |
11.2 (261) |
| 5 |
11.0 (738) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
2959 (13.3) |
| 2 |
1706 (13.3) |
| 3 |
738 (11.0) |
| 4 |
466 (9.4) |
| 5 |
457 (10.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot