NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,551.0 |
| Mean read quality |
11.9 |
| Median read length |
4,366.0 |
| Median read quality |
12.8 |
| Number of reads |
6,974.0 |
| Read length N50 |
4,749.0 |
| STDEV read length |
1,289.2 |
| Total bases |
31,739,014.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
6974 (100.0%) 31.7Mb |
| >Q7 |
6974 (100.0%) 31.7Mb |
| >Q10 |
6613 (94.8%) 30.2Mb |
| >Q12 |
5099 (73.1%) 23.5Mb |
| >Q15 |
107 (1.5%) 0.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.1 (4124) |
| 2 |
16.5 (4547) |
| 3 |
16.5 (3008) |
| 4 |
16.4 (5717) |
| 5 |
16.4 (5471) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
13307 (13.8) |
| 2 |
11020 (12.9) |
| 3 |
10996 (15.4) |
| 4 |
9706 (11.9) |
| 5 |
9675 (14.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot