NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,059.7 |
| Mean read quality |
10.7 |
| Median read length |
2,055.0 |
| Median read quality |
11.5 |
| Number of reads |
15.0 |
| Read length N50 |
3,207.0 |
| STDEV read length |
1,441.6 |
| Total bases |
30,896.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
15 (100.0%) 0.0Mb |
| >Q7 |
15 (100.0%) 0.0Mb |
| >Q10 |
13 (86.7%) 0.0Mb |
| >Q12 |
4 (26.7%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.1 (1914) |
| 2 |
13.5 (2970) |
| 3 |
13.1 (3552) |
| 4 |
12.9 (3829) |
| 5 |
11.8 (2888) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4364 (11.5) |
| 2 |
3829 (12.9) |
| 3 |
3552 (13.1) |
| 4 |
3350 (11.6) |
| 5 |
3207 (11.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot