NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,184.5 |
| Mean read quality |
11.8 |
| Median read length |
4,023.0 |
| Median read quality |
12.7 |
| Number of reads |
39,766.0 |
| Read length N50 |
4,358.0 |
| STDEV read length |
1,192.0 |
| Total bases |
166,400,861.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
39766 (100.0%) 166.4Mb |
| >Q7 |
39766 (100.0%) 166.4Mb |
| >Q10 |
37769 (95.0%) 158.3Mb |
| >Q12 |
27809 (69.9%) 117.3Mb |
| >Q15 |
622 (1.6%) 2.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.3 (3622) |
| 2 |
17.2 (2509) |
| 3 |
17.1 (3058) |
| 4 |
17.0 (3228) |
| 5 |
17.0 (6310) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
14276 (12.9) |
| 2 |
13802 (12.9) |
| 3 |
13727 (14.0) |
| 4 |
13077 (12.7) |
| 5 |
12026 (9.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot