NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,808.5 |
| Mean read quality |
11.6 |
| Median read length |
4,194.5 |
| Median read quality |
12.7 |
| Number of reads |
952.0 |
| Read length N50 |
4,617.0 |
| STDEV read length |
1,245.9 |
| Total bases |
4,577,735.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
952 (100.0%) 4.6Mb |
| >Q7 |
952 (100.0%) 4.6Mb |
| >Q10 |
865 (90.9%) 4.2Mb |
| >Q12 |
638 (67.0%) 3.1Mb |
| >Q15 |
25 (2.6%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.6 (5093) |
| 2 |
16.9 (3765) |
| 3 |
16.2 (5886) |
| 4 |
16.0 (4161) |
| 5 |
15.6 (4163) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
12172 (13.6) |
| 2 |
10419 (13.4) |
| 3 |
10341 (12.3) |
| 4 |
10210 (11.9) |
| 5 |
9811 (14.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot