NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,605.2 |
| Mean read quality |
12.4 |
| Median read length |
4,606.0 |
| Median read quality |
13.2 |
| Number of reads |
56.0 |
| Read length N50 |
5,067.0 |
| STDEV read length |
1,443.3 |
| Total bases |
257,894.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
56 (100.0%) 0.3Mb |
| >Q7 |
56 (100.0%) 0.3Mb |
| >Q10 |
54 (96.4%) 0.3Mb |
| >Q12 |
44 (78.6%) 0.2Mb |
| >Q15 |
9 (16.1%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.8 (2381) |
| 2 |
16.3 (4581) |
| 3 |
15.9 (4056) |
| 4 |
15.7 (3231) |
| 5 |
15.6 (5898) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7962 (12.8) |
| 2 |
7399 (10.4) |
| 3 |
6525 (14.2) |
| 4 |
6500 (12.1) |
| 5 |
6294 (14.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot