NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,470.0 |
| Mean read quality |
11.9 |
| Median read length |
4,305.0 |
| Median read quality |
13.0 |
| Number of reads |
81.0 |
| Read length N50 |
4,625.0 |
| STDEV read length |
1,201.9 |
| Total bases |
362,070.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
81 (100.0%) 0.4Mb |
| >Q7 |
81 (100.0%) 0.4Mb |
| >Q10 |
75 (92.6%) 0.3Mb |
| >Q12 |
61 (75.3%) 0.3Mb |
| >Q15 |
1 (1.2%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.0 (2833) |
| 2 |
14.9 (4106) |
| 3 |
14.9 (5869) |
| 4 |
14.8 (5327) |
| 5 |
14.8 (4867) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7887 (12.7) |
| 2 |
7391 (13.9) |
| 3 |
6907 (12.2) |
| 4 |
6546 (13.3) |
| 5 |
6531 (13.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot