NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,564.8 |
| Mean read quality |
11.4 |
| Median read length |
4,422.5 |
| Median read quality |
12.3 |
| Number of reads |
1,004.0 |
| Read length N50 |
4,716.0 |
| STDEV read length |
1,215.8 |
| Total bases |
4,583,103.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1004 (100.0%) 4.6Mb |
| >Q7 |
1004 (100.0%) 4.6Mb |
| >Q10 |
928 (92.4%) 4.3Mb |
| >Q12 |
579 (57.7%) 2.7Mb |
| >Q15 |
4 (0.4%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.4 (5464) |
| 2 |
15.7 (5007) |
| 3 |
15.2 (6431) |
| 4 |
15.1 (4677) |
| 5 |
14.9 (6276) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
14790 (12.3) |
| 2 |
10789 (11.5) |
| 3 |
8209 (12.2) |
| 4 |
8188 (12.8) |
| 5 |
8167 (13.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot