NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,965.0 |
| Mean read quality |
11.7 |
| Median read length |
3,901.0 |
| Median read quality |
12.6 |
| Number of reads |
3,793.0 |
| Read length N50 |
4,359.0 |
| STDEV read length |
1,428.5 |
| Total bases |
15,039,432.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3793 (100.0%) 15.0Mb |
| >Q7 |
3793 (100.0%) 15.0Mb |
| >Q10 |
3542 (93.4%) 14.1Mb |
| >Q12 |
2504 (66.0%) 10.2Mb |
| >Q15 |
79 (2.1%) 0.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.1 (7766) |
| 2 |
16.6 (5030) |
| 3 |
16.2 (4519) |
| 4 |
16.2 (3548) |
| 5 |
16.1 (4530) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11335 (13.1) |
| 2 |
10485 (10.2) |
| 3 |
10018 (12.6) |
| 4 |
9825 (13.1) |
| 5 |
9668 (11.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot