NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,363.1 |
| Mean read quality |
10.5 |
| Median read length |
4,106.0 |
| Median read quality |
11.2 |
| Number of reads |
1,080.0 |
| Read length N50 |
4,509.0 |
| STDEV read length |
1,482.0 |
| Total bases |
4,712,168.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1080 (100.0%) 4.7Mb |
| >Q7 |
1080 (100.0%) 4.7Mb |
| >Q10 |
903 (83.6%) 4.0Mb |
| >Q12 |
283 (26.2%) 1.3Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.1 (4755) |
| 2 |
13.9 (4181) |
| 3 |
13.9 (4179) |
| 4 |
13.9 (2701) |
| 5 |
13.8 (4290) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
12548 (12.2) |
| 2 |
12471 (12.1) |
| 3 |
9705 (13.4) |
| 4 |
9630 (12.8) |
| 5 |
9554 (11.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot