NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,752.9 |
| Mean read quality |
10.3 |
| Median read length |
5,670.5 |
| Median read quality |
11.4 |
| Number of reads |
226.0 |
| Read length N50 |
5,994.0 |
| STDEV read length |
1,554.2 |
| Total bases |
1,300,155.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
226 (100.0%) 1.3Mb |
| >Q7 |
226 (100.0%) 1.3Mb |
| >Q10 |
175 (77.4%) 1.0Mb |
| >Q12 |
70 (31.0%) 0.4Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.0 (4812) |
| 2 |
13.8 (6456) |
| 3 |
13.7 (8859) |
| 4 |
13.6 (6338) |
| 5 |
13.6 (9296) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10658 (11.9) |
| 2 |
10635 (10.4) |
| 3 |
10601 (10.6) |
| 4 |
10593 (10.5) |
| 5 |
9296 (13.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot