NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,861.9 |
| Mean read quality |
7.3 |
| Median read length |
2,384.0 |
| Median read quality |
8.6 |
| Number of reads |
106,010.0 |
| Read length N50 |
10,865.0 |
| STDEV read length |
6,410.0 |
| Total bases |
515,406,587.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
98960 (93.3%) 505.7Mb |
| >Q7 |
82875 (78.2%) 452.5Mb |
| >Q10 |
9304 (8.8%) 40.8Mb |
| >Q12 |
187 (0.2%) 0.0Mb |
| >Q15 |
16 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.6 (18) |
| 2 |
18.4 (17) |
| 3 |
18.2 (16) |
| 4 |
17.6 (19) |
| 5 |
17.5 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
155424 (7.1) |
| 2 |
66994 (9.2) |
| 3 |
65043 (6.8) |
| 4 |
63867 (5.7) |
| 5 |
60444 (6.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot