NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,522.9 |
| Mean read quality |
10.7 |
| Median read length |
2,456.0 |
| Median read quality |
11.8 |
| Number of reads |
272,188.0 |
| Read length N50 |
2,846.0 |
| STDEV read length |
1,157.9 |
| Total bases |
686,713,112.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
272185 (100.0%) 686.7Mb |
| >Q7 |
272141 (100.0%) 686.7Mb |
| >Q10 |
213905 (78.6%) 541.1Mb |
| >Q12 |
123854 (45.5%) 312.9Mb |
| >Q15 |
4065 (1.5%) 7.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
29.3 (16) |
| 2 |
27.9 (16) |
| 3 |
27.7 (16) |
| 4 |
26.5 (18) |
| 5 |
26.4 (18) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
12926 (9.2) |
| 2 |
11387 (8.9) |
| 3 |
11377 (12.8) |
| 4 |
10965 (8.7) |
| 5 |
10820 (10.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot