NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
1,045.7 |
| Mean read quality |
9.3 |
| Median read length |
353.0 |
| Median read quality |
10.3 |
| Number of reads |
2,329.0 |
| Read length N50 |
2,387.0 |
| STDEV read length |
1,221.2 |
| Total bases |
2,435,405.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
2300 (98.8%) 2.4Mb |
| >Q7 |
2214 (95.1%) 2.4Mb |
| >Q10 |
1248 (53.6%) 1.7Mb |
| >Q12 |
716 (30.7%) 0.9Mb |
| >Q15 |
209 (9.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
32.6 (17) |
| 2 |
31.5 (16) |
| 3 |
31.3 (17) |
| 4 |
31.1 (16) |
| 5 |
30.6 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7309 (10.8) |
| 2 |
6451 (12.0) |
| 3 |
6444 (10.5) |
| 4 |
6417 (12.2) |
| 5 |
6201 (9.2) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
1,048.8 |
| Mean read quality |
9.3 |
| Median read length |
354.5 |
| Median read quality |
10.3 |
| Number of reads |
2,322.0 |
| Read length N50 |
2,387.0 |
| STDEV read length |
1,221.7 |
| Total bases |
2,435,291.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
2293 (98.8%) 2.4Mb |
| >Q7 |
2207 (95.0%) 2.4Mb |
| >Q10 |
1241 (53.4%) 1.7Mb |
| >Q12 |
709 (30.5%) 0.9Mb |
| >Q15 |
202 (8.7%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
29.5 (16) |
| 2 |
29.2 (16) |
| 3 |
29.0 (18) |
| 4 |
28.9 (17) |
| 5 |
28.8 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7309 (10.8) |
| 2 |
6451 (12.0) |
| 3 |
6444 (10.5) |
| 4 |
6417 (12.2) |
| 5 |
6201 (9.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot