NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
737.8 |
| Mean read quality |
5.4 |
| Median read length |
269.5 |
| Median read quality |
6.0 |
| Number of reads |
12,292.0 |
| Read length N50 |
2,549.0 |
| STDEV read length |
1,842.1 |
| Total bases |
9,069,570.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
8763 (71.3%) 7.3Mb |
| >Q7 |
4087 (33.2%) 4.8Mb |
| >Q10 |
646 (5.3%) 0.4Mb |
| >Q12 |
171 (1.4%) 0.0Mb |
| >Q15 |
30 (0.2%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.6 (16) |
| 2 |
18.1 (16) |
| 3 |
17.9 (18) |
| 4 |
17.1 (17) |
| 5 |
16.9 (18) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
77035 (4.9) |
| 2 |
51543 (4.2) |
| 3 |
36717 (9.7) |
| 4 |
24233 (9.6) |
| 5 |
23428 (5.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot