NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
596.9 |
| Mean read quality |
5.8 |
| Median read length |
215.0 |
| Median read quality |
6.5 |
| Number of reads |
11,441.0 |
| Read length N50 |
2,037.0 |
| STDEV read length |
1,691.2 |
| Total bases |
6,829,382.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
9038 (79.0%) 5.1Mb |
| >Q7 |
4630 (40.5%) 2.1Mb |
| >Q10 |
1480 (12.9%) 0.8Mb |
| >Q12 |
563 (4.9%) 0.1Mb |
| >Q15 |
137 (1.2%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.9 (16) |
| 2 |
20.7 (16) |
| 3 |
20.3 (16) |
| 4 |
20.3 (16) |
| 5 |
20.2 (17) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
62410 (4.5) |
| 2 |
59912 (5.1) |
| 3 |
41782 (2.9) |
| 4 |
39875 (4.6) |
| 5 |
38045 (4.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot