NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
1,438.4 |
| Mean read quality |
10.6 |
| Median read length |
1,172.0 |
| Median read quality |
11.9 |
| Number of reads |
5,593.0 |
| Read length N50 |
2,684.0 |
| STDEV read length |
1,385.5 |
| Total bases |
8,044,799.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
5549 (99.2%) 8.0Mb |
| >Q7 |
5463 (97.7%) 8.0Mb |
| >Q10 |
4319 (77.2%) 6.5Mb |
| >Q12 |
2677 (47.9%) 3.5Mb |
| >Q15 |
711 (12.7%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
34.1 (16) |
| 2 |
33.2 (17) |
| 3 |
33.0 (18) |
| 4 |
32.9 (16) |
| 5 |
32.0 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8221 (9.2) |
| 2 |
8045 (10.4) |
| 3 |
7682 (12.3) |
| 4 |
7349 (12.8) |
| 5 |
7317 (11.5) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
1,442.7 |
| Mean read quality |
10.6 |
| Median read length |
1,184.0 |
| Median read quality |
11.9 |
| Number of reads |
5,576.0 |
| Read length N50 |
2,684.0 |
| STDEV read length |
1,385.3 |
| Total bases |
8,044,521.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
5532 (99.2%) 8.0Mb |
| >Q7 |
5446 (97.7%) 8.0Mb |
| >Q10 |
4302 (77.2%) 6.5Mb |
| >Q12 |
2660 (47.7%) 3.5Mb |
| >Q15 |
694 (12.4%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
29.9 (16) |
| 2 |
29.9 (16) |
| 3 |
29.8 (19) |
| 4 |
29.8 (16) |
| 5 |
29.8 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8221 (9.2) |
| 2 |
8045 (10.4) |
| 3 |
7682 (12.3) |
| 4 |
7349 (12.8) |
| 5 |
7317 (11.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot