NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
1,899.3 |
| Mean read quality |
10.9 |
| Median read length |
1,808.0 |
| Median read quality |
12.1 |
| Number of reads |
34,311.0 |
| Read length N50 |
2,244.0 |
| STDEV read length |
1,048.7 |
| Total bases |
65,165,564.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
34292 (99.9%) 65.2Mb |
| >Q7 |
34200 (99.7%) 65.1Mb |
| >Q10 |
27912 (81.4%) 53.5Mb |
| >Q12 |
17478 (50.9%) 33.2Mb |
| >Q15 |
1132 (3.3%) 1.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
33.3 (17) |
| 2 |
33.0 (16) |
| 3 |
33.0 (16) |
| 4 |
31.3 (16) |
| 5 |
31.0 (17) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9326 (12.7) |
| 2 |
8695 (12.9) |
| 3 |
8563 (9.7) |
| 4 |
8463 (11.0) |
| 5 |
8267 (13.3) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
1,899.6 |
| Mean read quality |
10.9 |
| Median read length |
1,808.0 |
| Median read quality |
12.1 |
| Number of reads |
34,304.0 |
| Read length N50 |
2,244.0 |
| STDEV read length |
1,048.5 |
| Total bases |
65,165,450.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
34285 (99.9%) 65.2Mb |
| >Q7 |
34193 (99.7%) 65.1Mb |
| >Q10 |
27905 (81.3%) 53.5Mb |
| >Q12 |
17471 (50.9%) 33.2Mb |
| >Q15 |
1125 (3.3%) 1.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
30.0 (16) |
| 2 |
29.6 (16) |
| 3 |
29.6 (18) |
| 4 |
29.6 (16) |
| 5 |
29.6 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9326 (12.7) |
| 2 |
8695 (12.9) |
| 3 |
8563 (9.7) |
| 4 |
8463 (11.0) |
| 5 |
8267 (13.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot