NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,480.9 |
| Mean read quality |
6.9 |
| Median read length |
370.0 |
| Median read quality |
8.4 |
| Number of reads |
16,779.0 |
| Read length N50 |
9,880.0 |
| STDEV read length |
4,843.3 |
| Total bases |
41,626,285.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
14552 (86.7%) 40.5Mb |
| >Q7 |
10563 (63.0%) 38.3Mb |
| >Q10 |
5487 (32.7%) 25.8Mb |
| >Q12 |
535 (3.2%) 0.1Mb |
| >Q15 |
82 (0.5%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.1 (16) |
| 2 |
20.5 (16) |
| 3 |
18.9 (49) |
| 4 |
18.6 (16) |
| 5 |
18.5 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
55815 (9.8) |
| 2 |
50092 (10.4) |
| 3 |
48617 (3.3) |
| 4 |
48202 (11.2) |
| 5 |
43306 (11.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot