NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
896.9 |
| Mean read quality |
10.9 |
| Median read length |
677.0 |
| Median read quality |
12.2 |
| Number of reads |
72,979.0 |
| Read length N50 |
1,686.0 |
| STDEV read length |
921.9 |
| Total bases |
65,454,912.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
72537 (99.4%) 65.4Mb |
| >Q7 |
71235 (97.6%) 65.2Mb |
| >Q10 |
58562 (80.2%) 53.8Mb |
| >Q12 |
38696 (53.0%) 32.1Mb |
| >Q15 |
10433 (14.3%) 1.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
37.5 (16) |
| 2 |
37.0 (16) |
| 3 |
36.1 (16) |
| 4 |
35.8 (16) |
| 5 |
35.3 (17) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8594 (12.3) |
| 2 |
8374 (10.6) |
| 3 |
8052 (12.9) |
| 4 |
7892 (13.0) |
| 5 |
7544 (12.2) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
899.7 |
| Mean read quality |
10.9 |
| Median read length |
682.0 |
| Median read quality |
12.2 |
| Number of reads |
72,747.0 |
| Read length N50 |
1,687.0 |
| STDEV read length |
922.0 |
| Total bases |
65,451,121.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
72305 (99.4%) 65.4Mb |
| >Q7 |
71003 (97.6%) 65.2Mb |
| >Q10 |
58330 (80.2%) 53.8Mb |
| >Q12 |
38464 (52.9%) 32.1Mb |
| >Q15 |
10201 (14.0%) 1.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
33.6 (22) |
| 2 |
32.6 (21) |
| 3 |
31.4 (36) |
| 4 |
31.0 (23) |
| 5 |
30.8 (46) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8594 (12.3) |
| 2 |
8374 (10.6) |
| 3 |
8052 (12.9) |
| 4 |
7892 (13.0) |
| 5 |
7544 (12.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot