NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,852.1 |
| Mean read quality |
5.7 |
| Median read length |
288.0 |
| Median read quality |
6.6 |
| Number of reads |
14,977.0 |
| Read length N50 |
9,561.0 |
| STDEV read length |
4,269.7 |
| Total bases |
27,739,602.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
11399 (76.1%) 25.9Mb |
| >Q7 |
6698 (44.7%) 22.0Mb |
| >Q10 |
996 (6.7%) 2.6Mb |
| >Q12 |
126 (0.8%) 0.0Mb |
| >Q15 |
20 (0.1%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.3 (16) |
| 2 |
17.7 (16) |
| 3 |
17.4 (16) |
| 4 |
17.3 (20) |
| 5 |
17.2 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
61722 (9.3) |
| 2 |
43973 (8.9) |
| 3 |
42976 (9.3) |
| 4 |
42951 (9.5) |
| 5 |
42045 (7.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot