NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
2,397.6 |
| Mean read quality |
11.0 |
| Median read length |
2,428.5 |
| Median read quality |
12.4 |
| Number of reads |
1,994.0 |
| Read length N50 |
3,131.0 |
| STDEV read length |
1,529.3 |
| Total bases |
4,780,895.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1984 (99.5%) 4.8Mb |
| >Q7 |
1968 (98.7%) 4.8Mb |
| >Q10 |
1640 (82.2%) 4.1Mb |
| >Q12 |
1133 (56.8%) 2.8Mb |
| >Q15 |
174 (8.7%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
35.6 (16) |
| 2 |
33.9 (16) |
| 3 |
32.9 (16) |
| 4 |
31.5 (16) |
| 5 |
31.3 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9165 (11.7) |
| 2 |
8288 (11.8) |
| 3 |
7810 (14.6) |
| 4 |
7663 (11.7) |
| 5 |
7583 (13.2) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
2,404.8 |
| Mean read quality |
11.0 |
| Median read length |
2,432.0 |
| Median read quality |
12.4 |
| Number of reads |
1,988.0 |
| Read length N50 |
3,131.0 |
| STDEV read length |
1,525.9 |
| Total bases |
4,780,799.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1978 (99.5%) 4.8Mb |
| >Q7 |
1962 (98.7%) 4.8Mb |
| >Q10 |
1634 (82.2%) 4.1Mb |
| >Q12 |
1127 (56.7%) 2.8Mb |
| >Q15 |
168 (8.5%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
30.0 (16) |
| 2 |
29.1 (17) |
| 3 |
28.4 (18) |
| 4 |
28.3 (16) |
| 5 |
27.9 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9165 (11.7) |
| 2 |
8288 (11.8) |
| 3 |
7810 (14.6) |
| 4 |
7663 (11.7) |
| 5 |
7583 (13.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot