NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,997.7 |
| Mean read quality |
11.0 |
| Median read length |
2,968.5 |
| Median read quality |
12.1 |
| Number of reads |
113,296.0 |
| Read length N50 |
3,326.0 |
| STDEV read length |
1,148.0 |
| Total bases |
339,622,964.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
113293 (100.0%) 339.6Mb |
| >Q7 |
113287 (100.0%) 339.6Mb |
| >Q10 |
94741 (83.6%) 286.4Mb |
| >Q12 |
58687 (51.8%) 178.0Mb |
| >Q15 |
1673 (1.5%) 4.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
27.4 (16) |
| 2 |
24.3 (16) |
| 3 |
24.2 (16) |
| 4 |
23.5 (16) |
| 5 |
22.5 (106) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
12042 (12.6) |
| 2 |
11008 (9.9) |
| 3 |
10486 (9.3) |
| 4 |
10406 (11.8) |
| 5 |
10195 (12.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot