NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
965.8 |
| Mean read quality |
10.8 |
| Median read length |
772.5 |
| Median read quality |
12.1 |
| Number of reads |
8,668.0 |
| Read length N50 |
1,821.0 |
| STDEV read length |
945.0 |
| Total bases |
8,371,542.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
8619 (99.4%) 8.4Mb |
| >Q7 |
8489 (97.9%) 8.3Mb |
| >Q10 |
6785 (78.3%) 6.7Mb |
| >Q12 |
4444 (51.3%) 3.8Mb |
| >Q15 |
1358 (15.7%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
35.6 (16) |
| 2 |
34.5 (16) |
| 3 |
34.4 (16) |
| 4 |
34.4 (16) |
| 5 |
34.1 (17) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6122 (11.6) |
| 2 |
6078 (11.0) |
| 3 |
5979 (11.6) |
| 4 |
5611 (13.6) |
| 5 |
5253 (7.7) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
969.4 |
| Mean read quality |
10.8 |
| Median read length |
784.0 |
| Median read quality |
12.1 |
| Number of reads |
8,635.0 |
| Read length N50 |
1,821.0 |
| STDEV read length |
945.0 |
| Total bases |
8,370,999.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
8586 (99.4%) 8.4Mb |
| >Q7 |
8456 (97.9%) 8.3Mb |
| >Q10 |
6752 (78.2%) 6.7Mb |
| >Q12 |
4411 (51.1%) 3.8Mb |
| >Q15 |
1325 (15.3%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
31.2 (20) |
| 2 |
30.0 (16) |
| 3 |
30.0 (16) |
| 4 |
29.9 (16) |
| 5 |
29.9 (17) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6122 (11.6) |
| 2 |
6078 (11.0) |
| 3 |
5979 (11.6) |
| 4 |
5611 (13.6) |
| 5 |
5253 (7.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot