NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,072.1 |
| Mean read quality |
5.4 |
| Median read length |
285.0 |
| Median read quality |
6.0 |
| Number of reads |
11,648.0 |
| Read length N50 |
5,396.0 |
| STDEV read length |
2,942.9 |
| Total bases |
12,487,402.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
8333 (71.5%) 10.8Mb |
| >Q7 |
4009 (34.4%) 7.5Mb |
| >Q10 |
673 (5.8%) 0.8Mb |
| >Q12 |
164 (1.4%) 0.0Mb |
| >Q15 |
21 (0.2%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
22.8 (17) |
| 2 |
18.4 (16) |
| 3 |
17.8 (16) |
| 4 |
17.6 (19) |
| 5 |
17.5 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
119590 (5.4) |
| 2 |
80406 (6.3) |
| 3 |
48440 (8.0) |
| 4 |
38382 (3.6) |
| 5 |
37965 (5.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot